cufflinks software package provides Transcript assembly, differential expression and regulation for RNA-Seq, you can install in your Ubuntu 16.10 (Yakkety Yak) by running the commands given below on the terminal,
$ sudo apt-get update $ sudo apt-get install cufflinks
cufflinks is installed in your system.
Make ensure the cufflinks package were installed using the commands given below,
$ sudo dpkg-query -l | grep cufflinks *
You will get with cufflinks package name, version, architecture and description in a table
| Distro | Ubuntu 16 10 yakkety yak |
| Section | Science |
| Package | cufflinks |
| Version | 2.2.1-3 |
| Description | Transcript assembly, differential expression and regulation for RNA-Seq |
| Sub Section | Science |